d TimsTof Extractor introduced with the following features akin to the SM Data Extractors for other instrument vendors: Translate nucleotide FASTA to protein FASTA utility introduced.When the Make Proteogenomic Summary Tables feature is used. Individual Databases Instead Of Combined - option added to the Concatenate FASTA files utility,.Apply all tasks to individual directories (no combined autovalidation or reports).Using an identical workflow except for a personalized sequence database with single amino acid variants (SAAVs)ĭerived from whole exome sequencing (WES) and aberrant splice junctions derived from RNA-seq. New features motivated by the analysis of cohorts of immunopeptidomic samples where each sample is analyzed independently Anaconda Anaconda3-2022.05-Windows-x86_64.exe is supplied with this release.Installation and Configuration Python v3.9 Several other new features have also been included.īelow describes additional differences between the BI.07.11 and prior versions of Spectrum Mill. Overhaul of underlying data structures that diminish by 2-fold the memory required for Protein/Peptide Summary reports for large TMT proteome cohorts.Subset-specific FDR filter for extracting a subset of peptides/PTM-sites derived from a rare source, apply subset-specific FDR filtering.Report-to-Plots tool for making plots of metrics from SM tabular reports (PSM/Peptide score metrics, sample handling Quality Metrics, and Spectral Features).The BI.08.01 version of Spectrum Mill is a major version release due to the addition of: What's New What's New in This Version of Spectrum Mill
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